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        <a href="weblogolib-module.html">Package&nbsp;weblogolib</a> ::
        Module&nbsp;colorscheme
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module colorscheme</h1><p class="nomargin-top"><span class="codelink"><a href="weblogolib.colorscheme-pysrc.html">source&nbsp;code</a></span></p>
<pre class="literalblock">
Popular color codings for nucleic and amino acids. 

Classes:
    ColorScheme -- A color scheme
    ColorGroup  
    
    
Generic
    monochrome

Nucleotides
    nucleotide
    base pairing

Amino Acid
    hydrophobicity
    chemistry
    charge
    taylor

Status : Beta - Needs documentation.

</pre>

<!-- ==================== CLASSES ==================== -->
<a name="section-Classes"></a>
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme.ColorScheme-class.html" class="summary-name">ColorScheme</a><br />
      A coloring of an alphabet.
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme.ColorGroup-class.html" class="summary-name">ColorGroup</a><br />
      Associate a group of symbols with a color
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<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
<table class="summary" border="1" cellpadding="3"
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<tr bgcolor="#70b0f0" class="table-header">
  <td align="left" colspan="2" class="table-header">
    <span class="table-header">Variables</span></td>
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="monochrome"></a><span class="summary-name">monochrome</span> = <code title="ColorScheme([])">ColorScheme([])</code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#nucleotide" class="summary-name">nucleotide</a> = <code title="ColorScheme([ColorGroup(&quot;G&quot;, &quot;orange&quot;), ColorGroup(&quot;TU&quot;, &quot;red&quot;), Color\
Group(&quot;C&quot;, &quot;blue&quot;), ColorGroup(&quot;A&quot;, &quot;green&quot;)])">ColorScheme([ColorGroup(&quot;G&quot;, &quot;orange&quot;), ColorGrou<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#base_pairing" class="summary-name">base_pairing</a> = <code title="ColorScheme([ColorGroup(&quot;TAU&quot;, &quot;darkorange&quot;, &quot;Weak (2 Watson-Crick hyd\
rogen bonds)&quot;), ColorGroup(&quot;GC&quot;, &quot;blue&quot;, &quot;Strong (3 Watson-Crick hydro\
gen bonds)&quot;)],)">ColorScheme([ColorGroup(&quot;TAU&quot;, &quot;darkorange&quot;, &quot;W<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#hydrophobicity" class="summary-name">hydrophobicity</a> = <code title="ColorScheme([ColorGroup(&quot;RKDENQ&quot;, &quot;black&quot;, &quot;hydrophobic&quot;), ColorGroup(\
&quot;SGHTAP&quot;, &quot;green&quot;, &quot;neutral&quot;), ColorGroup(&quot;YVMCLFIW&quot;, &quot;blue&quot;, &quot;hydroph\
ilic&quot;)], alphabet= seq.unambiguous_protein_alphabet)">ColorScheme([ColorGroup(&quot;RKDENQ&quot;, &quot;black&quot;, &quot;h<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#chemistry" class="summary-name">chemistry</a> = <code title="ColorScheme([ColorGroup(&quot;GSTYC&quot;, &quot;green&quot;, &quot;polar&quot;), ColorGroup(&quot;NQ&quot;, &quot;\
purple&quot;, &quot;neutral&quot;), ColorGroup(&quot;KRH&quot;, &quot;blue&quot;, &quot;basic&quot;), ColorGroup(&quot;D\
E&quot;, &quot;red&quot;, &quot;acidic&quot;), ColorGroup(&quot;PAWFLIMV&quot;, &quot;black&quot;, &quot;hydrophobic&quot;)],\
 alphabet= seq.unambiguous_protein_alphabet)">ColorScheme([ColorGroup(&quot;GSTYC&quot;, &quot;green&quot;, &quot;polar&quot;)<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#charge" class="summary-name">charge</a> = <code title="ColorScheme([ColorGroup(&quot;KRH&quot;, &quot;blue&quot;, &quot;Positive&quot;), ColorGroup(&quot;DE&quot;, &quot;\
red&quot;, &quot;Negative&quot;)], alphabet= seq.unambiguous_protein_alphabet)">ColorScheme([ColorGroup(&quot;KRH&quot;, &quot;blue&quot;, &quot;Positive&quot;), C<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="weblogolib.colorscheme-module.html#taylor" class="summary-name">taylor</a> = <code title="ColorScheme([ColorGroup('A', '#CCFF00'), ColorGroup('C', '#FFFF00'), C\
olorGroup('D', '#FF0000'), ColorGroup('E', '#FF0066'), ColorGroup('F',\
 '#00FF66'), ColorGroup('G', '#FF9900'), ColorGroup('H', '#0066FF'), C\
olorGroup('I', '#66FF00'), ColorGroup('K', '#6600FF'), ColorGroup('L',\
 '#33FF00'), ColorGroup('M', '#00FF00'), ColorGroup('N', '#CC00FF'), C\
olorGroup('P', '#FFCC00'), ColorGroup('Q', '#FF00CC'), ColorGroup('R',\
 '#0000FF'), ColorGroup('S', '#FF3300'), ColorGroup('T', '#FF6600'), C\
olorGroup('V', '#99FF00'), ColorGroup('W', '#00CCFF'), ColorGroup('Y',\
...">ColorScheme([ColorGroup('A', '#CCFF00'), ColorGroup('<code class="variable-ellipsis">...</code></code>
    </td>
  </tr>
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<!-- ==================== VARIABLES DETAILS ==================== -->
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<a name="nucleotide"></a>
<div>
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       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">nucleotide</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup(&quot;G&quot;, &quot;orange&quot;), ColorGroup(&quot;TU&quot;, &quot;red&quot;), Color<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Group(&quot;C&quot;, &quot;blue&quot;), ColorGroup(&quot;A&quot;, &quot;green&quot;)])
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="base_pairing"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">base_pairing</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup(&quot;TAU&quot;, &quot;darkorange&quot;, &quot;Weak (2 Watson-Crick hyd<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
rogen bonds)&quot;), ColorGroup(&quot;GC&quot;, &quot;blue&quot;, &quot;Strong (3 Watson-Crick hydro<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
gen bonds)&quot;)],)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="hydrophobicity"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">hydrophobicity</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup(&quot;RKDENQ&quot;, &quot;black&quot;, &quot;hydrophobic&quot;), ColorGroup(<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
&quot;SGHTAP&quot;, &quot;green&quot;, &quot;neutral&quot;), ColorGroup(&quot;YVMCLFIW&quot;, &quot;blue&quot;, &quot;hydroph<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
ilic&quot;)], alphabet= seq.unambiguous_protein_alphabet)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="chemistry"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">chemistry</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup(&quot;GSTYC&quot;, &quot;green&quot;, &quot;polar&quot;), ColorGroup(&quot;NQ&quot;, &quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
purple&quot;, &quot;neutral&quot;), ColorGroup(&quot;KRH&quot;, &quot;blue&quot;, &quot;basic&quot;), ColorGroup(&quot;D<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
E&quot;, &quot;red&quot;, &quot;acidic&quot;), ColorGroup(&quot;PAWFLIMV&quot;, &quot;black&quot;, &quot;hydrophobic&quot;)],<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
 alphabet= seq.unambiguous_protein_alphabet)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="charge"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">charge</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup(&quot;KRH&quot;, &quot;blue&quot;, &quot;Positive&quot;), ColorGroup(&quot;DE&quot;, &quot;<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
red&quot;, &quot;Negative&quot;)], alphabet= seq.unambiguous_protein_alphabet)
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="taylor"></a>
<div>
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">taylor</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
ColorScheme([ColorGroup('A', '#CCFF00'), ColorGroup('C', '#FFFF00'), C<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
olorGroup('D', '#FF0000'), ColorGroup('E', '#FF0066'), ColorGroup('F',<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
 '#00FF66'), ColorGroup('G', '#FF9900'), ColorGroup('H', '#0066FF'), C<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
olorGroup('I', '#66FF00'), ColorGroup('K', '#6600FF'), ColorGroup('L',<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
 '#33FF00'), ColorGroup('M', '#00FF00'), ColorGroup('N', '#CC00FF'), C<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
olorGroup('P', '#FFCC00'), ColorGroup('Q', '#FF00CC'), ColorGroup('R',<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
 '#0000FF'), ColorGroup('S', '#FF3300'), ColorGroup('T', '#FF6600'), C<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
olorGroup('V', '#99FF00'), ColorGroup('W', '#00CCFF'), ColorGroup('Y',<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
<code class="variable-ellipsis">...</code>
</pre></td></tr></table>
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